PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0198s0350.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 189aa    MW: 21352.2 Da    PI: 9.5497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0198s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17548148
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaia 48
                            ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a++ 
  SapurV1A.0198s0350.1.p  5 KKFRGVRQRR-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDD 48
                            59*****998.**********8.....334******************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-31564No hitNo description
Gene3DG3DSA:3.30.730.101.4E-30664IPR001471AP2/ERF domain
PROSITE profilePS5103220.429664IPR001471AP2/ERF domain
SMARTSM003801.7E-34670IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-18664IPR016177DNA-binding domain
PfamPF008471.7E-10647IPR001471AP2/ERF domain
PRINTSPR003679.1E-11718IPR001471AP2/ERF domain
PRINTSPR003679.1E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MVQSKKFRGV RQRRWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDDQA AVLMSGRNAK  60
TNFPCLKLRM KMTQYQIRKC SKAPSPSMTY LRLDTENSIG VWQKRAGQQS NSNWVMTVQL  120
GTRDKSQVSE STLPLPDQSS GGVSGPECRA EMDEEERVAL QMIEELLYRS CPSPTFGAQD  180
HGDGSFFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-14265164ATERF1
3gcc_A1e-14265164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308080.21e-103AP2 domain-containing transcription factor family protein
SwissprotQ9XI335e-64WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLB9HAK51e-103B9HAK5_POPTR; AP2 domain-containing transcription factor family protein
STRINGPOPTR_0006s06870.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.13e-65ERF family protein